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mega 6 program  (Biodesign International Inc)

 
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    Biodesign International Inc mega 6 program
    Mega 6 Program, supplied by Biodesign International Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/mega+6+program/mega+6+06/pmc05308760-101-17-26
    Average 90 stars, based on 1 article reviews
    mega 6 program - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Construct:

    Article Title: Occult HBV infection in HCC and cirrhotic tissue of HBsAg-negative patients: a virological and clinical study
    Article Snippet: Sequences were aligned using the BioEdit program with reference sequences for the different genotypes deposited in GenBank (accession numbers: X02763, X51970, AF090842 for genotype A; D00329, AF100309, AB033554 for genotype B; X04615, M12906, AB014381 for genotype C; X65259, M32138, X85254 for genotype D; X75657, AB032431 for genotype E; X69798, AB036910, AF223965 for genotype F; AF160501, AB064310, AF405706 for genotype G; AY090454, AY090457, AY090460 for genotype H). .. Genetic distances were calculated with the Kimura-2-parameter algorithm and a neighbour-joining phylogenetic tree was constructed with the Mega 6 program http://www.megasoftware.net (Center of Evolutionary Functional Genomics, Biodesign Institute, Arizona State University, USA). ..

    Article Title: Characterization of extracellular agarase production by Acinetobacter junii PS12B, isolated from marine sediments
    Article Snippet: A marine, gram negative, rod shaped bacterium that degrades agar was isolated from the east coast of India and was identified to be Acinetobacter junii PS12B based on 16S rRNA gene sequencing.. The effect of different culture conditions, namely pH of the medium, time and temperature of incubation and the agar concentration in the medium, on the agarase production by the strain, was evaluated.. The agarase production was significantly (po0.05) affected by the culture conditions.

    Functional Assay:

    Article Title: Occult HBV infection in HCC and cirrhotic tissue of HBsAg-negative patients: a virological and clinical study
    Article Snippet: Sequences were aligned using the BioEdit program with reference sequences for the different genotypes deposited in GenBank (accession numbers: X02763, X51970, AF090842 for genotype A; D00329, AF100309, AB033554 for genotype B; X04615, M12906, AB014381 for genotype C; X65259, M32138, X85254 for genotype D; X75657, AB032431 for genotype E; X69798, AB036910, AF223965 for genotype F; AF160501, AB064310, AF405706 for genotype G; AY090454, AY090457, AY090460 for genotype H). .. Genetic distances were calculated with the Kimura-2-parameter algorithm and a neighbour-joining phylogenetic tree was constructed with the Mega 6 program http://www.megasoftware.net (Center of Evolutionary Functional Genomics, Biodesign Institute, Arizona State University, USA). ..



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    Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the nucleotide sequences of the partials S genes. The tree was generated by the maximum likelihood method of the software <t>MEGA</t> v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not shown). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols, the Japanese strains prior to 2013 are marked by solid diamond symbols , and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols
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    Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the nucleotide sequences of the partials S genes. The tree was generated by the maximum likelihood method of the software MEGA v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not shown). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols, the Japanese strains prior to 2013 are marked by solid diamond symbols , and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols

    Journal: SpringerPlus

    Article Title: US-like isolates of porcine epidemic diarrhea virus from Japanese outbreaks between 2013 and 2014

    doi: 10.1186/s40064-015-1552-z

    Figure Lengend Snippet: Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the nucleotide sequences of the partials S genes. The tree was generated by the maximum likelihood method of the software MEGA v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not shown). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols, the Japanese strains prior to 2013 are marked by solid diamond symbols , and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols

    Article Snippet: Phylogenetic trees based on the nucleotide sequences of the partial S gene and ORF3 gene were constructed with maximum likelihood method using Hasegawa-Kishino-Yano substitution model with discrete Gamma distribution, and bootstrap tests of 1000 replicates in the MEGA v.6 program.

    Techniques: Virus, Generated, Software

    Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the ORF3 of PEDV. The tree was generated by the maximum likelihood method of the software MEGA v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not show). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols

    Journal: SpringerPlus

    Article Title: US-like isolates of porcine epidemic diarrhea virus from Japanese outbreaks between 2013 and 2014

    doi: 10.1186/s40064-015-1552-z

    Figure Lengend Snippet: Phylogenetic analysis of the porcine epidemic diarrhea virus isolates based on the ORF3 of PEDV. The tree was generated by the maximum likelihood method of the software MEGA v.6.05. Numbers at nodes represent the percentage of 1000 bootstrap replicates (values <70 are not show). The scale bar indicates nucleotide substitution per site. The recent Japanese PEDV isolates in this study are marked by solid round symbols and the vaccine strains being used in Japan are marked by solid square symbols . The US strains and US-like strains are marked by triangle hollow symbols , while the S INDEL strains are marked by solid triangle symbols

    Article Snippet: Phylogenetic trees based on the nucleotide sequences of the partial S gene and ORF3 gene were constructed with maximum likelihood method using Hasegawa-Kishino-Yano substitution model with discrete Gamma distribution, and bootstrap tests of 1000 replicates in the MEGA v.6 program.

    Techniques: Virus, Generated, Software